Standard Imaging pipeline specification
=======================================

Association Diagram
-------------------

.. figure:: generated/associationmatrix.png


MICADO Dataitems
-------------------

.. include:: generated/dataitemsraw.rst
.. include:: generated/dataitemsexternal.rst
.. include:: generated/dataitemspro.rst


MICADO Pipeline
-------------------

MICADO Recipes
--------------

.. include:: generated/Persistence.rst
.. include:: generated/MasterDark.rst
.. include:: generated/MasterFlat.rst
.. include:: generated/Detrend.rst
.. include:: generated/Background.rst
.. include:: generated/IllumCorr.rst
.. include:: generated/DetrendFinal.rst
.. include:: generated/Astrom.rst
.. include:: generated/PhotomStdfield.rst
.. include:: generated/Calibrated.rst
.. include:: generated/Stack.rst
.. include:: generated/DetrendHCI.rst
.. include:: generated/DetrendHCIOffset.rst
.. include:: generated/Starcenter.rst
.. include:: generated/Staroffset.rst
.. include:: generated/CalibHCI.rst

MICADO Recipe Steps
-------------------

.. include:: generated/CreateVarDqLayers.rst
.. include:: generated/DerivePersistence.rst
.. include:: generated/ApplyPersistence.rst
.. include:: generated/ApplyMasterDark.rst
.. include:: generated/ApplyMasterFlat.rst
.. include:: generated/DeriveMasterDark.rst
.. include:: generated/DeriveMasterFlat.rst
.. include:: generated/DeriveBackground.rst
.. include:: generated/AddBackgroundLayer.rst
.. include:: generated/DeriveIllumCorr.rst
.. include:: generated/ApplyIllumCorr.rst
.. include:: generated/CreateSourceCatalogFinal.rst
.. include:: generated/CreateSourceCatalogIllum.rst
.. include:: generated/CorrectGeomDistortion.rst
.. include:: generated/SpatialCrossmatch.rst
.. include:: generated/DeriveAstrom.rst
.. include:: generated/CreateSourceCatalogAstrom.rst
.. include:: generated/SpatialCrossmatchPhotom.rst
.. include:: generated/DerivePhotom.rst
.. include:: generated/ApplyAstrom.rst
.. include:: generated/ApplyPhotom.rst
.. include:: generated/CombineExposures.rst
.. include:: generated/CreateSourceCatalogHCI.rst
.. include:: generated/ExtractDiffractionPeaks.rst
.. include:: generated/ComputeCentroid.rst
.. include:: generated/ComputePhotomInScienceFilter.rst
.. include:: generated/DerivePositionStar.rst
.. include:: generated/CalculateAngle.rst